Home
|
お知らせ
|
概要
|
ご意見・ご要望
Quick Search
All
Strain
cDNA
BAC
Fosmid
for
Japanese|
English
Genome Tools
Physical Maps
Alignment View
Blast Search
In-Silico PCR
Sequence Cutter
Pattern Match - ZFN
Pattern Match - CRISPR
Search for CRISPR target site
with micro-homology sequences
CRISPR/Cas9 target online
predictor at COS, Heidelberg
Pattern Match - ZFN
Parameters
Medaka pattern match tool for short sequence and/or pattern.
please input more than 2 characters sequence and/or pattern.
If you search a sequence > 20bp, please use
Blast Search
.
Sequence and/or Pattern
Left half site :
Right half site:
Allowed space:
(one or two values separated by a comma. for example, 5,6.
each value must be less than 20.)
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
From
to
Scaffold
From
to
Condition
Target:
chromosome
scaffold
Method: Search by
query
site
Strand:
Both strands
Forward
Reverse
Mismatch:
0
1
2
Ignore Case
Search Pattern
HELP: Supported Pattern Syntax and Examples
Search type
Character
Meaning
Examples
Nucleotide searches
ACTGU
Exact match
ATGTCGG
R
Any purine base (AG)
ATGRCGG
Y
Any pyrimidine base (CT)
ATGYCGG
S
G or C
ATGSCGG
W
A or T
ATGWCGG
M
A or C
ATGMCGG
K
G or T
ATGKCGG
V
A or C or G
ATGVCGG
H
A or C or T
ATGHCGG
D
A or G or T
ATGDCGG
B
C or G or T
ATGBCGG
N or X
A or C or G or T
ATGNCGG
Pattern searches
*
[ ]
A subset of elements
[ATC]CCTGC
[^ ]
An excluded subset of elements
[^ATC]CCTGC
( )
Specifies a sub-pattern
(CTG){2,}
{m,n}
{m} = exactly m times
{m,} = at least m times
{,m} = 0 to m times
{m,n} = between m and n times
GCC{3,5}GCG
*
The mismatch option can only be used in a sequence does not contain pattern (regular expression).