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Pattern Match - ZFN
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Pattern Match - ZFN

Parameters

Medaka pattern match tool for short sequence and/or pattern.
please input more than 2 characters sequence and/or pattern.
If you search a sequence > 20bp, please use Blast Search.


Sequence and/or Pattern
 
Left half site :
Right half site:
Allowed  space:
(one or two values separated by a comma. for example, 5,6.
each value must be less than 20.)
Chromosome  From  to
Scaffold  From  to
Condition
Target:
Method: Search by 
Strand:
Mismatch:
Ignore Case
 
   Search Pattern    

HELP: Supported Pattern Syntax and Examples

Search typeCharacterMeaningExamples
Nucleotide searches ACTGU Exact match ATGTCGG
R Any purine base (AG) ATGRCGG
Y Any pyrimidine base (CT) ATGYCGG
S G or C ATGSCGG
W A or T ATGWCGG
M A or C ATGMCGG
K G or T ATGKCGG
V A or C or G ATGVCGG
H A or C or T ATGHCGG
D A or G or T ATGDCGG
B C or G or T ATGBCGG
N or X A or C or G or T ATGNCGG
Pattern searches* [  ] A subset of elements [ATC]CCTGC
[^ ] An excluded subset of elements [^ATC]CCTGC
(  ) Specifies a sub-pattern (CTG){2,}
{m,n} {m} = exactly m times
{m,} = at least m times
{,m} = 0 to m times
{m,n} = between m and n times
GCC{3,5}GCG

* The mismatch option can only be used in a sequence does not contain pattern (regular expression).

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