Pattern Match - ZFN

Parameters

Medaka pattern match tool for short sequence and/or pattern.
please input more than 2 characters sequence and/or pattern.
If you search a sequence > 20bp, please use Blast Search.

Sequence and/or Pattern

Left half site :
Right half site:
Allowed space:
(one or two values separated by a comma. for example, 5,6. each value must be less than 20.)

Chromosome

From to

Scaffold

From to

Condition

Target:
Method: Search by
Strand:
Mismatch:
Ignore Case



	Search Pattern

HELP: Supported Pattern Syntax and Examples

Search type	Character	Meaning	Examples
Nucleotide searches	ACTGU	Exact match	ATGTCGG
	R	Any purine base (AG)	ATGRCGG
	Y	Any pyrimidine base (CT)	ATGYCGG
	S	G or C	ATGSCGG
	W	A or T	ATGWCGG
	M	A or C	ATGMCGG
	K	G or T	ATGKCGG
	V	A or C or G	ATGVCGG
	H	A or C or T	ATGHCGG
	D	A or G or T	ATGDCGG
	B	C or G or T	ATGBCGG
	N or X	A or C or G or T	ATGNCGG
Pattern searches*	[ ]	A subset of elements	[ATC]CCTGC
	[^ ]	An excluded subset of elements	[^ATC]CCTGC
	( )	Specifies a sub-pattern	(CTG){2,}
	{m,n}	{m} = exactly m times {m,} = at least m times {,m} = 0 to m times {m,n} = between m and n times	GCC{3,5}GCG

* The mismatch option can only be used in a sequence does not contain pattern (regular expression).