Oryzagenome2 | GWAS
sponsored by NBRP & TRIC/ROIS
Sequence information of wild Oryza species
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Last updated : 2018-10-05
GWAS
GWAS support services comprise the genotypic and phenotypic data of wild
O.rufipogon
accessions.
Genotype files
O.rufipogon accessions Tabular formatted genotype
(space delimited, 0 = ref allele 2 = alt allele (not necessarily minor),
imputed data
135MB )
O.rufipogon accessions VCF file (
imputed data
186MB )
O.rufipogon accessions Plink formatted genotype (
ped
4GB ,
map
57MB )
Phenotype files
Under construction
BED format annotations
CGSNL gene
140KB
highly differentiated loci
4KB
selective sweep indica
2KB
selective sweep japonica
2KB
selective sweep full
2KB
Fst in O. rufipogon population
Fst values among three ecotypes in O. rufipogon accessions defined by Huang et al. 2012. (
Map.Fst.txt
73MB )