Oryzagenome2 | GWAS

GWAS

GWAS support services comprise the genotypic and phenotypic data of wild O.rufipogon accessions.

Genotype files


  • O.rufipogon accessions Tabular formatted genotype
    (space delimited, 0 = ref allele 2 = alt allele (not necessarily minor), imputed data 135MB )
  • O.rufipogon accessions VCF file ( imputed data 186MB )
  • O.rufipogon accessions Plink formatted genotype ( ped 4GB , map 57MB )

Phenotype files


  • Under construction

BED format annotations


Fst in O. rufipogon population


  • Fst values among three ecotypes in O. rufipogon accessions defined by Huang et al. 2012. ( Map.Fst.txt 73MB )