GWAS

GWAS support services comprise the genotypic and phenotypic data of wild O.rufipogon accessions.

Genotype files

• O.rufipogon accessions Tabular formatted genotype
  (space delimited, 0 = ref allele 2 = alt allele (not necessarily minor), imputed data 135MB )
• O.rufipogon accessions VCF file ( imputed data 186MB )
• O.rufipogon accessions Plink formatted genotype ( ped 4GB , map 57MB )

Phenotype files

• Under construction

BED format annotations

• CGSNL gene 140KB
• highly differentiated loci 4KB
• selective sweep indica 2KB
• selective sweep japonica 2KB
• selective sweep full 2KB

Fst in O. rufipogon population

• Fst values among three ecotypes in O. rufipogon accessions defined by Huang et al. 2012. ( Map.Fst.txt 73MB )