OryzaGenome provides genome sequence information for 21 wild Oryza species together with several cultivated strain reference sequences. As of the OryzaGenome release 1.0 (on June 19, 2015), SNP information of 446 accessions of O. rufipogon is presented. Chromosome view, genome sequences and gene annotations are provided based on the latest reference Nipponbare genome, IRGSP version 1.0. Following these SNP data, we plan to build and release pseudo-molecules and/or genome–wide variation information for an additional 20 wild Oryza species and accessions from the NIG/NBRP collection in the near future. Release 1.0 contents
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Datasets provided here are collected mainly from the wild Oryza species maintained in the National Institute of Genetics (NIG) under the National Bioresource Project (NBRP). We also thank the Genetic Function Systems Project in TRIC/ROIS and the Project for Promotion of Next-Generation Genome Research Network, NIG for supporting the preservation of wild accessions, sequencing, data analysis and database construction. We are grateful to Mr Toshinobu Ebata and Dynacom Co. Ltd., for constructing the OryzaGenome database. |